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SRX8053613: GSM4453419: 0195FLAG1log_IP; Halobacterium salinarum; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 3.3M spots, 169.2M bases, 55.1Mb downloads

Submitted by: NCBI (GEO)
Study: CdrL ChIP-seq data for the paper "CdrS is required for cell division site placement but not elongation in hypersaline-adapted archaea"
show Abstracthide Abstract
Precise control of the cell cycle is central to the physiology of all cells. In prior work we demonstrated that archaeal cells maintain a constant cell size; however, the regulatory mechanisms underlying the cell cycle remain unexplored in this domain of life. In this study we use genetics, functional genomics, and quantitative imaging to identify and characterize the CdrSL gene regulatory network in a model species of archaea. We demonstrate the central role of these ribbon-helix-helix family transcription factors in the regulation of cell division. In this GEO series related to this study, we use ChIP-seq analysis to demonstrate the binding of CdrL to the upstream region of the cdrS-ftsZ2 locus. We conclude that the CdrSL-Z2 transcriptional network is required to coordinate cell division with cell growth in archaea. Overall design: Examination of CdrL binding sites in the halophilic archaeon Halobacterium salinarum in mid-logarithmic and stationary phases of growth.
Sample: 0195FLAG1log_IP
SAMN14534548 • SRS6423508 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 4000
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Libraries were constructed using the KAPA Hyper Prep kit and Illumina TruSeq adapters according to manufactuer's instructions. DNA library quality was assessed by Bioanalyzer using a High Sensitivity DNA chip (Agilent). Samples were pooled and run in a single lane on an Illumina HiSeq 4000 (Duke Sequencing and Genomics Technologies core).
Experiment attributes:
GEO Accession: GSM4453419
Links:
Runs: 1 run, 3.3M spots, 169.2M bases, 55.1Mb
Run# of Spots# of BasesSizePublished
SRR114774543,317,371169.2M55.1Mb2020-04-06

ID:
10495522

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